Faculty: Joseph Shaw
Selected Works:
Reports and Publications:
Selected Works:
- "The ecoresponsive genome of Daphnia pulex," (with J. K. Colbourne, D. Gilbert, M. E. Pfrender, et al.), Science, 331(6017): 555-561 (2011)
- "Will genetic adaptation of natural populations to chemical pollution result in lower or higher tolerance to future climate change?" (with J. Asselman, J. K Colbourne, D. DeConick, K. A. C. De Schamphelaere, S. Glaholt, C. R. Janssen, M. Messiaen, and J. R. Shaw), Integrated Environmental Assessment and Management, 7(1): 141–143 (2011)
- "Arsenic inhibits SGK1 activation of CFTR Cl- channels in the gill of the killifish, Fundulus heteroclitus." (with R. Barnaby, J. M. Bomberger, B. Coutermarsh, T. LaCasse, J. R. Shaw, B. A. Stanton, and J. VanderHeide). Aquatic Toxicology, 98: 157-164 (2010)
- "Daphnia as an emerging model for toxicological genomics," (with A. Callaghan, J. K. Colbourne, I. Colson, B. D. Eads, D. Gilbert, B. Jansen, R. Klaper, M. E. Pfrender, J. R. Shaw, and R. Sibly), in Advances in Experimental Biology, Volume 2: Comparative Toxicogenomics (C. Hogstrand and P. Kille, Eds.). London: Elsevier Science (2008)
- "Gene response profiles for Daphnia pulex exposed to the environmental stressor cadmium reveal novel crustacean metallothioneins," (with C. Y. Chen, J. K. Colbourne, J. C. Davey, C. L. Folt, S. P. Glaholt, J. W. Hamilton, T. H. Hampton, and J.R. Shaw), BMC Genomics, 8: 477 (2007). (*article flagged as highly accessed with 4422 views between December 21, 2007 and January 10, 2010)
- "The role of SGK and CFTR in acute adaptation to seawater in Fundulus heteroclitus," (with R. Barnaby, C. Chapline, B. Coutermarsh, T. LaCasse, K. Karlson, A. Lankowski, D. Sato, J. R. Shaw, B. A. Stanton, C. R. Stanton, S. E. Stanton, and J. VanderHeide), Cellular Physiology and Biochemistry, 22(1-4): 69-78 (2008)
- "The influence of exposure history on arsenic accumulation and toxicity in the killifish, Fundulus heteroclitus," (K. Gabor, J. W. Hamilton, E. Hand, B. Jackson, J. R. Shaw, B. A. Stanton, and S. Stanton), Environmental Toxicology and Chemistry, 26(12): 2704-2709 (2007)
Reports and Publications:
- Holsopple, J. M., Smoot, S. R., Popodi, E. M., Colbourne, J. K., Shaw, J. R., Oliver, B., Kaufman, T. C., & Tennessen, J. M. (2023). Assessment of chemical toxicity in adult Drosophila melanogaster. Journal of Visualized Experiments, 193, e650291
- Shelton, D. S., Suriyampola, P. S., Dinges, Z. M., Glaholt, S. P., Shaw, J. R., & Martins, E. P. (2023). A pair of cadmium-exposed zebrafish affect boldness and landmark use in the un-exposed majority. BioRxiv
- “Pollution and health - A progress report,” (with Richard Fuller, Phillip Landrigan, others), The Lancet Planetary Health, (2022)
- “Toxicity by descent: A comparative approach for chemical hazard assessment,” (with John K Colbourne; Elena Sostare; others), Environmental Advances, (2022)
- “Arsenic exposure induces a bimodal toxicity response in zebrafish,” (with Jason A Coral; S Heaps; others), Environmental Pollution, (2021)
- “Extensive standing genetic variation from a small number of founders enables rapid adaptation in Daphnia,” (with Anurag A; Jiarui Zhou; others), Nature Communications, (2021)
- “Genome-Wide Analysis of Cadmium. Induced, Germline Mutations in a Long-Term Daphnia pulex Mutation-Accumulation Experiment,” (with Nathan Keith; Craig E Jackson; others), Environmental Health Perspectives, (2021)
- "Adaptive introgression enables evolutionary rescue from extreme environmental pollution," (with E. Oziolor, N. Reid, S. Yair, K. Lee, S. Guberman-VerPloeg, P. Bruns, A. Whitehead, and C. Matson), Science, 364: 455-457, (2019)
- "Dynamics of cadmium acclimation in Daphnia pulex: Linking fitness costs, cross-tolerance, and hyper-induction of metallothionein," (with J. Colbourne, S. Glaholt, E. Turner, C. Folt, and C. Chen), Environmental Science & Technology, 53: 3850-3859, (2019)
- "Gene Coexpression networks drive and predict reproductive effects in Daphnia in response to environmental disturbances," (with J. Asselman, M. Pfrender, J. Lopez, and K. DeSchamphelaere), Environmental Science and Technology, 53: 3850-2859, (2019)
- "Profiling microRNA expression in Atlantic killifish (Fundulus heteroclitus) gill and responses to arsenic and hyperosmotic stress," (with B. Goodale, T. Hampton, E. Ford, C. Jackson, B. Stanton, and B. King), Aquatic Toxicology, 206: 142-153, (2019)
- "Towards sustainable environmental quality: Priority research questions for North America," (with A. Fairbrother, D. Muir, K. Solomon, G. Ankley, and several others)), Environmental Toxicology and Chemistry, 38: 1606-1624, (2019)
- "Arsenic Reduces Gene Expression Response to Changing Salinity in Killifish," (with T. Hampton, C. Jackson, D. Jung, C. Chen, S. Glaholt, B. Stanton, and J. Colbourne), Environmental Science & technology, 52 (15): 8811-8821, (2018)
- "The Genomics of Cladoceran Physiology: Daphnia as a model," chapter in The Physiology of Cladocera, 2nd Edition, New York: Elsevier, pp 253-280, (2017)
- "The landscape of extreme genomic variation in the highly adaptable Atlantic killifish," (with N. Reid, C. Jackson, D. Gilbert, P. Minx, M. Montague, T. Hampton, L. Helfrich, B. King, D. Nacci, N. Aluru, and others), Genome Biology and Evolution, 9 (3), (2017)
- "Use of Physical Therapists to Identify and Treat Musculoskeletal Injuries at" The Tip of the Trident," (with L. Brown and B. Jansen), Journal of Special Operations Medicine: A Peer Reviewed Journal for SOF Medical Professionals, 17 (4): 45-48, (2017)
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“The Genomics of Cladoceran Physiology: Daphnia as a model,” The Physiology of Cladocera, Elsevier (2017)
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“Single toxin dose-response models revisited,” (with E. Demidenko, S. Glaholt, E. Kyker-Snowman, C.Y. Chen), Toxicol Appl Pharmacol, 12-23 (2017)
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“The Atlantic killifish (Fundulus heteroclitus) genome and the landscape of genome variation within a population,” (with N. M. Reid, C. E. Jackson, D. Gilbert, P. Minx, M. J. Montague, T. M. Hampton, L. W. Helfrich, B. L. King, D. Nacci, N. Aluru, S. I. Karchner, J. K. Colbourne, M. E. Hahn, M. F. Oleksiak, D. L. Crawford, W. C. Warren, A. Whitehead), Genome Biology and Evolution, 9: 659-676, (2017)
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“High mutational rates of large-scale duplication and deletion in Daphnia pulex,” (with N. Keith, A. E. Tucker, C. E. Jackson, W. Sung, J. I. Lucas Lledo, D. R. Schrider, S. Schaack, J. L. Dudycha, M. Ackerman, A. J. Younge, Joseph Shaw, Michael Lynch), Genome Research, (1) 60-9, (2016)
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“The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish,” (with N. M. Reid, D. A. Proestou, B. W. Clark, W. C. Warren, J. K. Colbourne, S. I. Karchner, M. E. Hahn, D. Nacci, M. F. Oleksiak, D. L. Crawford, A. Whitehead), Science (6317) 1305-1308 (2016)
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“Thermal variation and factors influencing vertical migration behavior in Daphnia populations,” (with Stephen Glaholt, M. L. Kennedy, E. Turner, J. K. Colbourne), J. Therm Biol, (2016)
- Shaw JR, Pfrender ME, Eads BD, Klaper R, Callaghan A, Sibly R, Colson I, Jansen B, Gilbert D, Colbourne JK. Daphnia as an emerging model for toxicological genomics. In: Recent Advances in Experimental Biology, Volume 2: Comparative Toxicogenomics (2008)
- Shaw JR, Sato D, VanderHeide J, LaCasse T, Stanton CR, Lankowski A, Stanton SE, Chapline C, Coutermarsh B, Barnaby R, Karlson K, Stanton BA . The Role of SGK and CFTR in Acute Adaptation to Seawater in Fundulus heteroclitus. Cell Physiol Biochem. 22 (2008)